Resources

Useful links and resources for our research.

Lab Links

• Chang Ye on GitHub

Pipelines

• m5C-UBSseq— Pipeline for m5C UBS-seq analysis.
• m6A-CAMseq— Pipeline for m6A CAM-seq analysis.
• pseudoU-BIDseq— Pipeline for pseudoU BID-seq analysis.
• m6A-SACseq— Pipeline for m6A SAC-seq analysis.
• pseudoU-PUMseq— Pipeline for pseudoU PUM-seq analysis.
• m6A-eTAMseq— Pipeline for m6A eTAM-seq analysis.

Tools

• cfutils bio— Chromatogram File Utils
• cutseq tool— Adapter removal for NGS data
• mpileup— Extract nucleotide/read counts from multiple bam files
• cpup— Convert mpileup to base count tsv

PolyU Links

• The Hong Kong Polytechnic University
• Department of Applied Biology and Chemical Technology (ABCT)
• University Library