Resources
Here are some useful links and resources for our research.
Lab Links
Pipelines
- m5C-UBSseq - Pipeline for m5C UBS-seq analysis.
- m6A-CAMseq - Pipeline for m6A CAM-seq analysis.
- pseudoU-BIDseq - Pipeline for pseudoU BID-seq analysis.
- m6A-SACseq - Pipeline for m6A SAC-seq analysis.
- pseudoU-PUMseq - Pipeline for pseudoU PUM-seq analysis.
- m6A-eTAMseq - Pipeline for m6A eTAM-seq analysis.
Tools
- cfutils - 🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing data.
- cutseq - ✂️ A tool for adapter removal from NGS data automatically.
- mpileup - Extract nucleotide/read counts at user specific loci from multiple bam files.
- cpup - Convert mpileup format to base count tsv table.